Category: Teaching resources (created 2007-06-05). These pages present
teaching resources that I have found. Also see Category: Critical appraisal, Category: Information searching, Category: Interesting stuff, Category: Statistical evidence. Other entries about teaching resources can be found in the
teaching resources page at the
StATS website.
2008
- P.Mean: Biostatistics or Health
Informatics programs in or near Kansas City (created 2008-10-18). I'm
looking to expand my knowledge base. I was wondering if there are any programs
in or near the Kansas City area that offer BioStats or Healthcare Informatics
types courses (things with a more math bent).
- P.Mean: Good examples of bad studies
(created 2008-09-26). Does any one have a good example of a fairly flawed therapy article for
a course that I teach in EBM. Seems most of the articles I find aren't too
badly designed. Students always want to see some bad articles to critique.
- P.Mean: What resources are available
for fellows? (created 2008-08-20). I am on the Core Curriculum Committee
for a fellowship program in medicine (details omitted to protect privacy) and
we are in the process of updating our reading list for the fellows in training.
One of the many topics we are trying to update is some basic info on
statistics. I was going to reference your book, but they are mostly looking for
good review articles that the fellows are more likely to look at. Specifically,
they want info on: Test-performance characteristics: principles of sensitivity,
specificity, predictive value, and ROC analysis. I was wondering also about
referencing your web page as well.
- P.Mean: Where can I learn more about
Statistics? (created 2008-07-18). Someone asked me how they could learn
more about a specialized topic in Statistics. They were willing to pay for
this, though they didn't have a lot of money.
- P.Mean: Getting on and off various email
lists (created 2008-07-17). In my transition to a new email address, I am
having to sign off and re-sign on to a variety of email lists. Here are the
details of how to do this for those lists related to my work.
Outside resources:
-
AP Statistics Curriculum 2007. UCLA. Excerpt: This is an
Internet-based E-Book for advanced-placement (AP) statistics educational
curriculum. The E-Book is initially developed by the UCLA Statistics Online
Computational Resource (SOCR), however, all statistics instructors,
researchers and educators are encouraged to contribute to this effort and
improve the content of these learning materials. There are 4 novel features of
this specific Statistics EBook – it is community-built, completely open-access
(in terms of use and contributions), blends concepts with technology and is
multi-lingual. This website was last verified on 2008-URL:
wiki.stat.ucla.edu/socr/index.php/AP_Statistics_Curriculum_2007
-
AP Statistics Module. Sampling and Experimentation: Planning and Conducting a
Study (PDF). Chris Olsen, Roxy Peck, Peter Flanagan-Hyde, Dick
Scheaffer, College Board. Description: This web page proivdes a lengthy
(122 page) discussion of how to plan and conduct a research study. It is
intended to help students studying for the Advanced Placement exam in
Statistics, but the advice is of general value to anyone involved in research.
This website was last verified on 2008-URL: apcentral.collegeboard.com/apc/public/repository/AP_Statistics_Module_Planning_and_Conducting_a_Study.pdf
-
Australasian Data and Story Library (OzDASL). Gordon Smyth.
Description: This website offers a library of data sets and associated
stories. It is intended as a resource for teachers of statistics, and emphasis
is given to data sets with an Australasian context. This website was last
verified on 2008-URL: www.statsci.org/data/
- Biostatistics The Bare Essentials. Geoffrey R.
Norman, PhD, David L. Streiner, PhD (1994) St. Louis, Missouri: Mosby-Year
Book, Inc.
[BookFinder4U link] Description: This book is good for someone looking
for an introduction to statistics. It is very readable book with a lot of
humor. There is a second edition, published in 2000, that I have not seen.
- The
Data and Story Library (DASL). Matthew Hutcheson, Mike Meyer,
Cara Olson, Paul Velleman, John Walker, Cornell University. Excerpt: "DASL
(pronounced 'dazzle') is an online library of datafiles and stories that
illustrate the use of basic statistics methods. We hope to provide data from a
wide variety of topics so that statistics teachers can find real-world
examples that will be interesting to their students." This website was
last verified on 2008-URL: lib.stat.cmu.edu/DASL/
- Database of mRNA gene expression profiles of
multiple human organs. C. G. Son, S. Bilke, S. Davis, B. T. Greer, J. S.
Wei, C. C. Whiteford, Q. R. Chen, N. Cenacchi, J. Khan. Genome Res 2005:
15(3); 443-50.
[Medline]
[Abstract] [Full
text] [PDF].
Description: This article describes an interesting data set, available for
free on the web, that represents DNA expression levels for a 158 tissues (19
different organs from 30 different individuals).
-
Journal
of Statistics Education (JSE) Data Archive. American Statistical
Association. Description: This website provides data sets used in the
various articles in the Journal of Statistics Education. This website was
last verified on 2008-URL: www.amstat.org/publications/jse/jse_data_archive.html
-
Martin Bland's Home Page. Martin Bland, University of York.
Description: This website includes teaching notes, publications, and other
material from Martin Bland. The breadth of coverage is outstanding. This site
can also be accessed from http://martinbland.co.uk. This website was last
verified on 2008-URL: www-users.york.ac.uk/~mb55/
- Progress in Evidence-Based Medicine. Commentary by Victor M.
Montori, MD, MSc; Gordon H. Guyatt, MD, MSc JAMA. 2008;300(15):1814-1816.
Description: This article summarizes one of the first publications about
Evidence Based Medicine, which appeared in JAMA in 1992. The authors go on to
discuss how EBM has changed since 1992.
[Full text]
[PDF]
-
Statistics Data Sets. UCLA. Description: This website provides
links to data sets from books, consulting projects, and government agencies,
and so forth. This website was last verified on 2002-URL:
www.stat.ucla.edu/data
-
StatLinks: Applied statistics, data analysis, and visualization.
Nick Barrowman. Description: This website provides links to resources of
interest to most practicing statisticians. It uses a social bookmarking system
(SlinkSet), which means that any registered user can add links and can vote on
links of others that they like. This website was last verified on
2008-URL: statlinks.slinkset.com
- Textbook examples.
UCLA Academic Technology Services. Excerpt: This page lists all of the books
for which we have developed web pages showing how to solve the examples using
common statistical packages. We encourage you to obtain the textbooks
associated with these pages to gain a deeper conceptual understanding of the
analyses illustrated (see our suggestions on Where to buy books). We are very
grateful to the authors of these textbooks for granting us permission to
create these pages and to distribute their data files via our web pages. URL:
www.ats.ucla.edu/stat/examples/
-
Weekly review of medical journals. Richard Lehman.
Description: This weblog is a summary of Richard Lehman's review of
interesting articles in the medical literature. Often the articles are
selected for what they can teach us about the research process as a whole. Dr.
Lehman takes a very light-hearted and breezy view which makes the entries a
lot of fun to read. This website was last verified on 2008-URL:
blogs.bmj.com/bmj/category/richard-lehmans-weekly-review-of-medical-journals
-
Articles on statistics, epidemiology and research design (The Medical Journal
of Australia). Description: The Medical Journal of Australia
publishes numerous articles on research methodology and all of the content is
full free text. This particular page on their website has links to over 100
articles about statistics, epidemiology, and research design. This website
was last verified on 2007-11-29. URL: www.mja.com.au/Topics/Statistics,%20epidemiology%20and%20research%20design.html
- GraphJam: Pop culture for people in
cubicles. (AKA Song Chart Meme). Description: This website shows humorous
ideas expressed as graphs (line graphs, bar charts, pie charts, etc.). URL:
graphjam.com
-
Stowers
Institute Bioinformatics Center and IT Group (Arcady Mushegian).
This website is cited in Category: Teaching
resources. Description: This page highlights the work of the
Bioinformatics Group at the Stowers Institute for Medical Research. The
researchers in this group provide numerous resources on new statistical
programs as well as how to effectively use existing programs like R and
Bioconductor. This website was last verified on 2007-10-12. URL:
research.stowers-institute.org/bioinfo/
Resources not yet documented:
All of the material above this paragraph is licensed under a
Creative Commons Attribution 3.0 United States License. This page was written by
Steve Simon and was last modified on
2008-11-26. The material
below this paragraph links to my
old website, StATS. Although I wrote all of the material
listed below, my ex-employer, Children's Mercy Hospital, has claimed copyright
ownership of this material. The brief excerpts shown here are included under
the fair use provisions of U.S. Copyright laws.
2008
- Stats: I hate bad research examples (April
23, 2008). Someone wrote in asking if I know of any good examples of
research studies that illustrate problems of making false generalizations. I
had to mention my book, of course, which has lots of commentary of actual
publications, most of which are open source and freely available on the web.
For what it’s worth, I do have a pedagogical bone to pick. I believe it is
not a good idea to find a “bad” publication and tear it apart.
- Stats: What sort of statistical
training is needed for basic scientists? (March 29, 2008). Someone wrote
to a mailing list sponsored by the American Statistical Association asking
about what resources to use in a statistics class aimed at basic scientists
(as opposed to public health students and clinical scientists). I offered a
few general recommendations.
- Stats: Statistics for Boards
(March 25, 2008). I was asked to give a talk to the medical residents
with the title "Statistics for Boards". Many health care professionals need
to take boards or other certifying examinations during their training and
afterwards to certify or re-certify their skill in an area. These boards
often ask some basic statistics questions. A common theme appears to be, what
statistic should I use in what situation. The answer often depends on what
the predictor variable is and what the outcome variable is.
- Stats: What have you changed your mind
about (January 18, 2008). A group called The Edge (www.edge.org) asks a
question each year of prominent scientists and a few select non-scientists.
This group represents from a broad range of backgrounds and disciplines
and provides an interesting variety of responses. Questions asked in the past
include: What are you optimistic about?, What is your dangerous idea?, and
What do you believe is true even though you cannot prove it? Just recently,
this group published responses to the 2008 question: What have you changed
your mind about? Why? Several of the responses touch directly or indirectly
on Statistics.
- Stats: Educational and
networking opportunities for statisticians in the Kansas City area (October
4, 2007). There are three groups that offer seminars, training classes
and informal networking opportunities for statisticians in the Kansas City
area.
- Stats: Classic references in
evidence based medicine (May 16, 2007). A couple of weeks ago, a regular
correspondent (PG) on the Evidence Based Health email discussion group asked
about what were the essential readings in Evidence Based Medicine (EBM).
These are articles beyond simple tutorials that are aimed at those who want
more specifics about EBM. The articles that this person suggested are quite
good. Here are some additional articles that may be helpful. They are
organized in a variety of topics.
- Stats: Where can you find
interesting case studies in Statistics? (May 2, 2007). Someone wrote in
to the MedStats email discussion
group and asked about where to find interesting articles with full free text
and sufficient detail that students could calculate some of the statistics on
their own. This person had relied on BMJ (formerly the British Medical
Journal), which is a source that I have also found useful.
- Stats: Teaching Statistics, An
International Journal for Teachers (January 3, 2007). A regular
contributor to EDSTAT-L (DR) mentioned the following interesting resource:
Teaching Statistics - An International Journal for Teachers.
Gerald Goodall, David Green, The Teaching Statistics Trust 2006. Accessed on
2007-1-3. www.rsscse.org.uk/ts/gtb/contents.html
- Stats: What percentage of medical
decisions are based on good evidence? (December 29, 2006). A
correspondent on the evidence based health list noted a commonly quoted
statistic that only 10% of all medical practices are based on solid evidence
(e.g., randomized trials) and asked for any recent data either supporting or
refuting this statistic. I shared several resources that I was aware of:
- Stats: Evidence-based development of
medical guidelines (December 13, 2006). An open source journal, Health
Research Policy and Systems, has a series of articles on how to develop
guidelines in a rigorous and evidence-base manner. The abstract of the first
article explains the genesis of this review: In 2005 the World Health
Organisation (WHO) asked its Advisory Committee on Health Research (ACHR) for
advice on ways in which WHO can improve the use of research evidence in the
development of recommendations, including guidelines and policies. The ACHR
established the Subcommittee on the Use of Research Evidence (SURE) to
collect background documentation and consult widely among WHO staff,
international experts and end users of WHO recommendations to inform its
advice to WHO. We have prepared a series of reviews of methods that are used
in the development of guidelines as part of this background documentation. We
describe here the background and methods of these reviews, which are being
published in Health Research Policy and Systems together with this
introduction.
- Stats: Top ten studies in EBM, Part 4
(September 14, 2006). About a year ago, I wanted to give a talk on the
ten studies that anyone who teaches EBM needs to know. These studies should
be well known in the research community; actual research studies (as opposed
to editorials); and illustrative of important issues in EBM. My previous
writings on the topic were a bit rambling, so I am going to try to organize
things a bit better.
- Stats: Email discussion groups
(September 13, 2006). An email discussion group is a collection of
individuals with a common interest who supply their email address to a common
site, typically called a listserver. When individuals in that group have
questions or comments on a topic of interest, they send an email to the
listserver and a copy of that message is sent to everyone in the group.
- Stats: Bernadine Healy weighs in on EBM
(September 11, 2006). An earlier weblog entry, Stats: Postmodern thought
and evidence based medicine (September 7, 2006), discussed a harsh criticism
of Evidence Based Medicine that was published in Deconstructing the
evidence-based discourse in health sciences: truth, power and fascism.
Dave Holmes, Stuart J. Murray, Amelie Perron, Genevieve Rail. International
Journal of Evidence-Based Healthcare 2006: 4(3); 180. A brief commentary by
Bernadine Healy published in U.S. News and World Report, cites this research,
and while not quite agreeing with the harsh language (Holmes et al repeatedly
compare proponents of EBM with fascists), does argue that "By anointing
only a small sliver of research as best evidence and discarding or devaluing
physician judgment and more than 90 percent of the medical literature,
patients are forced into a one-size-fits-all straitjacket."
- Stats: Postmodern thought and
evidence based medicine (September 7, 2006). A recently published article
has been drawing a lot of attention on the Internet. It takes a post-modern
look at Evidence Based Medicine and in the abstract they report that "the
evidence-based movement in the health sciences is outrageously exclusionary
and dangerously normative with regards to scientific knowledge. As such, we
assert that the evidence-based movement in health sciences constitutes a good
example of microfascism at play in the contemporary scientific arena."
- Stats: Research on the web (June 27, 2006).
I found this quote in WXPnews, an email newsletter covering developments with
Microsoft Windows XP for the typical end user: Doing research on the Web
is like using a library assembled piecemeal by pack rats and vandalized
nightly. - Roger Ebert as quoted in the June 27, 2006 issue of WXPnews,
www.wxpnews.com/archives/wxpnews-233-20060627.htm.
- Stats: Philosophy of teaching (June
20, 2006). The email discussion group, EDSTAT-L, has had an extended
discussion of teaching philosophy. I do some teaching myself, and I must
admit that I don't think nearly enough about my philosophy of teaching.
- Stats: Putting a human face on Evidence Based
Medicine (June 20, 2006). A correspondent (BD) on the Evidence Based
Health email discussion group pointed out the following web site:
www.uwec.edu/lgibbs/index.htm. The author of this website, Len Gibbs, is a
prominent expert in Evidence Based Medicine. He was recently diagnosed with
an aggressive form of prostate cancer.
- Stats: Eighteenth Annual Applied
Statistics in Agriculture Conference (May 4, 2006). Earlier this week, I
attended the Statistics in Agriculture conference that is held every year at
Kansas State University. I had the choice of Tampa, Flagstaff, Montreal, or
Vienna (see Where to go, where to go), and I chose Manhattan, Kansas instead.
Go figure. Several people noticed me taking notes during the talks and
I explained that I was going to publish some summaries of what I learned on
my web pages.
- Stats: Placing the symbol X-bar in a
document (April 17, 2006). Someone asked me how to place the symbol X-bar
into a word processing document. This is tricky to do because there is
nothing in the Symbol font that works and most word processing software
allows for underlines but not overlines. I use a product called MathType, but
it might be too expensive for someone who only needs an occasional symbol or
formula here and there. For the more casual user, there are several
solutions.
- Stats: Three new koans (April 17, 2006).
Over the weekend, I wrote three new koans: The Bowl of Wax Fruit, The Busy
Tailor, and Some Useless Gifts
- Stats: Statistical koan #4 (March 26, 2006).
Student Leaf asked Master Stem, "I have heard some of my teachers say 'I
accept the null hypothesis' and others say 'I fail to reject the alternative
hypothesis.' Why do these words not mean the same thing?"
- Stats: Statistical koan #3 (March 16,
2006). Student Leaf approached Master Stem with a question. "Master
Stem. My statistical model requires an assumption of normality, but I have an
outlier in the data. Should I not remove the outlier so I can satisfy this
assumption?"
- Stats: Best EBM articles in 2005 (March
6, 2006). One of the regular contributors to the Evidence Based Health
email discussion group asked what we felt were the Best EBM methods papers in
2005. I'll report on the articles that people suggest. Here are a few that I
like.
- Stats: Statistical koan #2 (Feburary
28, 2006). I got some limited feedback from EDSTAT-L about using koans to
illustrate difficult and subtle statistical concepts, and at least one person
thought that this device would end up confusing people more than helping
them. With that in mind, here is a second koan. Let me know if it confuses
more than it helps.
- Stats: Statistical koans (February 27,
2006). I've been thinking about using a literacy device known as a
koan to illustrate important
statistical issues. A koan is a story used in Buddhist teaching that involves
a seemingly meaningless or contradictory statement. Careful contemplation of
this statement leads you to a more fuller understanding of Buddhist teaching.
Often these stories end with a student reaching a state of greater
enlightenment, so might be related to the concept of experiencing an
epiphany.
- Stats: Seventeen years between research
and practice (November 2, 2005). I attended an excellent talk by one of
the nurses at CMH on the problems with implementing quality improvement
initiatives in health care. She cited an interesting statistics, that it
takes an average of 17 years for research findings to be implemented in
clinical practice. I asked her for the source of this statistic, and she
found several references to an article: Managing clinical knowledge for
health care improvement. Balas EA, Boren SA. In: Yearbook of Medical
Informatics 2000: Patient-Centered Systems. Stuttgart, Germany: Schattauer;
2000:65-70.
- Stats: Science mentoring (September
12, 2005). I received an email notice through the Kansas/Western Missouri
chapter of the American Statistical Association about "Meet the Science
Mentor Day." This is a half day workshop in the Kansas City area that allows
students working to talk to professional scientists to get advice on
possible science fair projects.
- Stats: What alternative medicine
can teach us about evidence-based medicine (August 23, 2005). This is a
rough outline of a seminar I will present in a couple of days. It
incorporates material from another talk, Is the randomized trial the gold
standard for research? The title of this talk seems to be backwards.
- Stats: Overview of
evidence-based-medicine (July 29, 2005). The Archives of Disease in
Childhood has a series of articles on evidence-based Medicine.
- Stats: Changes to STAT-L/sci.stat.consult
(May 25, 2005). Many years ago, I volunteered to develop a frequently
asked questions (FAQ) list for the email discussion group, STAT-L. This list
is hosted at McGill University and run under the capable leadership of
Michael Walsh.
- Stats: MedStats discussion group (April 25,
2005). If you don't get enough email already, a new discussion group,
MedStats, was created recently. MedStats is hosted on Google Groups. The main
page for MedStats is groups.google.com/group/MedStats and details about the
list appear at groups.google.com/group/MedStats/about.
- Stats: MedStats discussion group (April 25,
2005). If you don't get enough email already, a new discussion group,
MedStats, was created recently. MedStats is hosted on Google Groups. The main
page for MedStats is groups-beta.google.com/group/MedStats and details about
the list appear at groups-beta.google.com/group/MedStats/about.
- Stats: More on the top ten studies in EBM
(February 28, 2005). I may never get this paper done, but the effort is
still worthwhile in that I am learning a lot. I rediscovered a wonderful web
page developed by Ben Djulbegovic, Randomized trials that changed medical
practice, which along with Non-randomized trials that changed medical
practice lists research studies that have changed how we practice medicine.
- Stats: Developing good practice
guidelines (February 18, 2005). A physician here, Lloyd Olson, who has
been aggressively promoting Evidence Based Medicine suggested the following
interesting article on practice guidelines, Are guidelines following
guidelines? The methodological quality of clinical practice guidelines in the
peer-reviewed medical literature. Shaneyfelt TM, Mayo-Smith MF, Rothwangl
J. Jama 1999: 281(20); 1900-5.
- Stats: Report cards (February 16, 2005).
The Minnesota Department of Health recently published a report,
Minnesota hospitals' report on "never events" released. Robeznieks
A, Published in Amercian Medical News on February 21, 2005. Accessed on
2005-02-16. www.ama-assn.org/amednews/2005/02/21/prsc0221.htm, that
documenting 99 events occurring in Minnesota hospitals that should never
occur. This included things like wrong-site surgery, pressure ulcers, and
misuse of medical devices. Among these events, 20 resulted in a patient
death. This is an example of the increasing demand that hospitals and other
health care organizations produce "report cards" that tell the public how
well or poorly they are doing.
- Stats: Another top ten study in EBM
(February 14, 2005). Here's another nomination for the top ten studies in
EBM. One of the pitfalls of research evaluating diagnostic tests is spectrum
bias, and this was noted as early as 1978 in Problems of spectrum and bias
in evaluating the efficacy of diagnostic tests. Ransohoff DF, Feinstein
AR. N Engl J Med 1978: 299(17); 926-30.
- Stats: Best EBM methods or teaching papers in
2004 (February 3, 2005). Paul Glasziou compiled a list for the best EBM
papers in 2004. These papers had to deal with either methods for EBM or
teaching of EBM. Here is the list.
- Stats: Ten research studies that anyone
teaching EBM should be familiar with (January 17, 2005). When I get a
chance, I want to write a paper with a title along the lines of "Ten research
studies that anyone teaching EBM should be familiar with". These would be
studies that are well known in the research community; actual research
studies (as opposed to editorials); and illustrative of important issues in
EBM. One of the studies would be: A close look at therapeutic touch.
Rosa L, Rosa E, Sarner L, Barrett S. Jama 1998: 279(13); 1005-10.
- Stats: Top six mistakes in teaching EBM
(September 24, 2004). I attended a lunch roundtable session on the role
of statisticians in teaching Evidence-Based practice to future clinicians. I
didn't get a chance to write up a summary of this, but I wanted to share a
handout that the roundtable leader, Renee Stolove, shared with the group.
- Stats: International Classification of Functioning,
Disability, and Health (September 10, 2004). Donald Lollar presented a
seminar: "The International Classification of Functioning, Disability, and
Health (ICF)." The ICF is a framework for classifying health status that
complements ICD codes.
- Stats: Evidence Based Complementary and
Alternative Medicine (June 15, 2004). There's a new journal out with free
full text on the web. It is Evidence-based Complementary and Alternative
Medicine and is published by Oxford Journals online. I find that CAM makes
for interesting teaching examples because students are willing to be extra
skeptical for these studies and don't passively and uncritically accept the
findings on CAM research.
- Stats: Evidence Based lessons learned from
Cardiology (March 18, 2004). There was a nice series of articles in the
journal Circulation that appeared in 2002 with free full text online. These
articles offer specific lessons about evidence-based medicine.
- Stats: Statistical consulting (June 14,
2004). Most training programs in Statistics do a good job in emphasizing
the various tools that you will need, but it is much harder to teach the
nonstatistical aspects of statistical consulting.
- Stats: Evidence Based Medicine and Ethics
(February 20, 2004). The Journal of Medical Ethics has a series of
articles about ethics and evidence based medicine. These are pre-prints of
articles under review and you can prepare a response to these articles. I
found the article "Ethical problems arising in evidencebased complementary
and alternative medicine" Edzard Ernst, Michael H. Cohen, Julie Stone to be
especially intriguing.
- Stats: Educational Resources (February 3,
2004). Someone posed a question on the IRB Discussion forum wondering if
there was a source of free materials "that we can email or distribute as
hardcopy to our study coordinators and other research staff to help them keep
up to date on issues relevant to human subjects research." There's a lot of
good stuff on the web, I wrote back, but you have to live with uneven
quality, partisan viewpoints, and there is no one to collate and synthesize
the results.
What now?
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